JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B4GALNT3_chr12_454939_568509	0/0	c0011	2997	5	0	0	5	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0012	2997	4	0	3	0	1	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0013	2997	3	3	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0014	2997	3	0	1	0	2	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0015	2997	3	3	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0016	2997	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0017	2997	2	0	0	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0018	2997	2	0	1	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0019	2997	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0020	2997	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0021	2997	2	0	0	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0022	2997	2	0	1	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0023	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0024	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0025	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0026	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0027	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0028	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0029	2986	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0030	2997	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0031	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0032	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0033	2997	1	0	0	0	1	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0034	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0035	2997	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0036	2997	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0037	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0038	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0039	2997	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0040	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0041	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0042	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0043	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0044	2997	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0045	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0046	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0047	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0048	2997	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0049	2997	1	0	0	0	1	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0050	2997	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT4_chr11_364499_387117	1/1	c0001	3120	62	10	21	20	3	6	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0002	3120	45	7	12	16	3	7	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0003	3120	15	3	5	2	1	4	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0004	3120	6	5	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0005	3120	5	0	4	0	1	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0006	3121	5	1	2	0	0	2	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0007	3120	5	0	2	3	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0008	3120	4	3	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0009	3121	3	2	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0010	3120	3	2	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117