JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYT15_chr10_46574128_46597064	0/0	c0020	1266	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0021	1266	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0022	1266	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0023	1266	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT16_chr14_61807703_62117550	0/0	c0001	1938	80	47	17	10	3	3	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0002	1938	33	15	7	2	1	8	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0003	1938	29	1	12	13	0	3	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	1/1	c0004	1938	23	3	6	6	3	3	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0005	1938	2	2	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0006	1938	2	2	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0007	1938	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0008	1938	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0009	1938	1	0	0	0	1	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0010	1938	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	c0011	1938	1	0	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT17_chr16_19163240_19273332	1/1	c0001	1425	293	83	58	104	15	31	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0002	1425	15	5	0	4	3	3	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0003	1425	3	3	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0004	1425	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0005	1425	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0006	1425	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0007	1425	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0008	1425	1	0	0	0	0	1	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0009	1425	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0011	1425	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0012	1425	1	0	0	0	0	1	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0013	1425	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0014	1425	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	c0015	1425	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT1_chr12_78859774_79457008	0/1	c0001	1269	39	22	10	6	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	1/0	c0002	1269	20	7	4	6	0	2	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	c0003	1269	3	3	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT2_chr1_202585596_202715454	1/0	c0001	1260	86	22	15	38	1	9	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	c0002	1260	86	23	20	30	3	10	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/1	c0003	1260	74	9	18	28	9	9	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	c0004	1260	23	22	1	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	c0005	1260	4	0	2	0	2	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	c0006	1260	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	c0007	1260	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	c0008	1260	1	0	0	0	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT3_chr19_50616977_50644881	0/0	c0001	1773	205	69	59	41	13	23	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	1/0	c0002	1773	89	1	8	62	0	17	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/1	c0003	1773	35	2	5	21	1	5	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0004	1773	24	7	4	12	0	1	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0005	1773	12	6	1	3	1	1	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0006	1773	6	6	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0007	1773	5	0	0	5	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0008	1773	4	4	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0009	1773	2	0	0	0	1	1	copy fasta	SYT3	chr19	50616977	50644881