JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYT3_chr19_50616977_50644881	0/0	c0010	1773	1	1	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0011	1773	1	0	0	1	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0012	1773	1	1	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0013	1773	1	1	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0014	1773	1	0	1	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	c0015	1773	1	0	0	1	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT4_chr18_43262892_43282490	1/1	c0001	1278	432	85	68	221	12	44	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	c0002	1278	8	8	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	c0003	1278	2	0	2	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	c0004	1278	1	1	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	c0005	1278	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	c0006	1278	1	0	1	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	c0007	1278	1	0	1	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT5_chr19_55166196_55185289	1/1	c0001	1161	290	60	47	131	10	40	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0002	1161	89	10	25	48	0	6	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0003	1161	13	10	2	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0004	1161	3	3	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0005	1161	2	2	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0006	1161	2	0	0	0	1	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0007	1161	2	2	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0008	1161	2	0	0	2	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0009	1161	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0010	1161	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0011	1161	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0012	1161	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0013	1161	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0014	1161	1	0	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	c0015	1161	1	0	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT6_chr1_114084292_114158869	1/1	c0001	1533	257	51	48	122	7	27	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0002	1533	89	19	8	53	0	9	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0003	1533	65	20	18	17	3	7	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0004	1533	3	3	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0005	1533	2	2	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0006	1533	2	2	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0007	1533	2	0	0	2	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0008	1533	2	0	0	1	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0009	1533	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0010	1533	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0011	1533	1	0	0	1	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	c0012	1533	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT7_chr11_61508714_61586076	1/0	c0001	2061	129	34	28	45	5	16	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/1	c0002	2061	51	45	2	0	0	3	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0003	2061	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0004	2061	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0005	2061	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0006	2061	1	0	0	0	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0007	2061	1	0	0	0	1	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0008	2061	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	c0009	2061	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT8_chr11_1829990_1842521	0/0	c0001	1164	120	11	30	55	6	18	copy fasta	SYT8	chr11	1829990	1842521