JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYT8_chr11_1829990_1842521	0/0	c0002	1164	102	1	21	71	1	8	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0003	1164	95	21	16	44	6	8	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0004	1164	39	34	3	0	1	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0005	1164	34	5	8	12	1	8	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0006	1164	13	9	3	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	1/0	c0007	1164	7	5	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0008	1164	6	0	0	6	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0009	1164	5	0	0	4	1	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0010	1164	3	3	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0011	1164	3	0	0	3	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0012	1164	3	0	0	3	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0013	1164	2	1	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0014	1164	2	2	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0015	1164	2	2	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0016	1164	2	0	1	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0017	1164	1	0	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0018	1164	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0019	1164	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0020	1164	1	0	0	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0021	1164	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0022	1164	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0023	1164	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0024	1164	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0025	1164	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0026	1164	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0027	1164	1	0	0	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0028	1164	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/1	c0029	1164	1	0	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0030	1164	1	0	0	1	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0031	1164	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0032	1164	1	0	0	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0033	1164	1	0	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	c0034	1164	1	0	1	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT9_chr11_7246904_7474043	0/1	c0001	1476	187	56	40	56	10	24	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0002	1476	32	10	5	11	0	6	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0003	1476	18	4	2	12	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0004	1476	10	0	0	10	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0005	1476	7	6	1	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	1/0	c0006	1476	7	5	1	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0007	1476	4	0	0	4	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0008	1476	3	0	1	0	2	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0009	1476	2	2	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0010	1476	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	c0011	1476	1	0	0	1	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYTL1_chr1_27337022_27358932	1/0	c0001	1689	161	23	27	97	5	8	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/1	c0002	1689	76	11	10	34	6	14	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0003	1689	60	23	21	8	4	4	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0004	1689	46	29	9	3	3	2	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0005	1689	17	1	2	6	0	8	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0006	1689	5	0	4	0	0	1	copy fasta	SYTL1	chr1	27337022	27358932