JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYTL1_chr1_27337022_27358932	0/0	c0007	1689	2	2	0	0	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0008	1689	2	2	0	0	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0009	1689	2	2	0	0	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0010	1689	1	1	0	0	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0011	1689	1	0	1	0	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0012	1689	1	0	0	0	0	1	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0013	1689	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0014	1689	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0015	1689	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	c0016	1689	1	0	0	1	0	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL2_chr11_85689229_85816141	0/1	c0001	6720	135	33	19	66	6	10	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0002	6720	103	4	12	75	1	11	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	1/0	c0003	6720	23	7	4	0	5	6	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0004	6720	12	0	5	6	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0005	6720	10	8	2	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0006	6720	9	8	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0007	6720	8	0	4	3	1	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0008	6720	6	0	0	6	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0009	6720	6	4	2	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0010	6720	5	1	1	0	0	3	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0011	6720	4	4	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0012	6720	3	0	0	3	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0013	6720	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0014	6720	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0015	6720	2	0	1	0	1	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0016	6720	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0017	6720	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0018	6720	2	1	0	0	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0019	6720	2	1	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0020	6720	2	2	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0021	6720	2	1	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0022	6720	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0023	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0024	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0025	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0026	6720	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0027	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0028	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0029	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0030	6720	1	0	0	0	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0031	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0032	6720	1	0	0	0	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0033	6720	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0034	6720	1	0	0	0	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0035	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0036	6720	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0037	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0038	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0039	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0040	6720	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141