JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYTL2_chr11_85689229_85816141	0/0	c0041	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0042	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0043	6720	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0044	6720	1	0	0	0	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	c0045	6720	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL3_chr6_158645054_158769871	0/1	c0001	1833	122	39	35	20	3	24	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0002	1833	93	12	22	43	5	11	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0003	1833	24	9	9	4	0	2	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0004	1833	18	14	0	2	0	2	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0005	1833	10	8	2	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	1/0	c0006	1833	8	1	0	3	0	3	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0007	1833	4	4	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0008	1833	2	0	0	0	0	2	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0009	1833	2	2	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0010	1833	1	0	0	0	0	1	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0011	1833	1	0	0	1	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0012	1833	1	0	0	1	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0013	1833	1	0	0	1	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0014	1833	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0015	1790	1	0	0	0	0	1	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0016	1833	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0017	1833	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	c0018	1833	1	0	0	1	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL4_chrX_100669491_100737121	0/1	c0001	2016	219	14	47	115	10	32	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0002	2016	41	39	2	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	1/0	c0003	2016	18	16	0	0	1	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0004	2016	2	0	1	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0005	2016	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0006	2016	1	0	1	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0007	2016	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0008	2016	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	c0009	2016	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL5_chrX_38001553_38133816	1/1	c0001	2193	137	5	24	79	7	20	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0002	2193	51	26	9	11	0	5	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0003	2193	25	10	9	1	0	5	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0004	2193	21	21	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0005	2193	8	5	2	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0006	2193	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0007	2193	1	0	0	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0008	2193	1	1	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0009	2193	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0010	2193	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0011	2190	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0012	2193	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	c0013	2194	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYVN1_chr11_65122279_65139519	1/1	c0001	1854	348	79	58	157	13	39	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0002	1854	51	13	12	17	5	4	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0003	1854	5	5	0	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0004	1854	2	0	0	2	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0005	1854	1	0	0	0	0	1	copy fasta	SYVN1	chr11	65122279	65139519