JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYVN1_chr11_65122279_65139519	0/0	c0006	1854	1	0	0	1	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0007	1854	1	0	0	1	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0008	1854	1	0	1	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0009	1854	1	0	1	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	c0010	1854	1	1	0	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SZRD1_chr1_16362242_16403145	1/1	c0001	459	317	83	66	122	12	32	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	c0002	459	3	3	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZT2_chr1_43384899_43459247	1/1	c0001	10299	168	51	19	75	0	21	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0002	10299	44	1	22	16	3	2	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0003	10299	7	7	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0004	10299	6	6	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0005	10299	5	0	5	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0006	10299	5	3	0	0	0	2	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0007	10299	5	0	0	5	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0008	10299	4	4	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0009	10299	4	4	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0010	10299	3	3	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0011	10299	3	0	0	3	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0012	10299	2	2	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0013	10299	2	0	0	0	1	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0014	10299	2	0	0	0	2	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0015	10299	2	0	0	2	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0016	10299	2	0	0	2	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0017	10299	2	0	1	0	1	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0018	10299	2	1	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0019	10299	2	2	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0020	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0021	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0022	10299	1	0	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0023	10299	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0024	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0025	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0026	10299	1	0	0	0	0	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0027	10299	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0028	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0029	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0030	10264	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0031	10299	1	0	0	0	0	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0032	10299	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0033	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0034	10299	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0035	10299	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0036	10299	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0037	10299	1	0	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0038	10299	1	0	0	0	1	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	c0039	10299	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
TAAR1_chr6_132638312_132664182	1/1	c0001	1020	262	78	53	91	9	29	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0002	1020	93	3	20	63	2	5	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0003	1020	41	5	4	28	2	2	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0004	1020	27	0	3	24	0	0	copy fasta	TAAR1	chr6	132638312	132664182