JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAAR1_chr6_132638312_132664182	0/0	c0005	1020	4	0	0	4	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0006	1020	2	2	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0007	1020	2	2	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0008	1020	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0009	1020	1	0	1	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0010	1020	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0011	1020	1	0	0	0	1	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	c0012	1020	1	0	1	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR2_chr6_132612150_132629275	1/0	c0001	1056	295	20	74	149	18	33	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0002	1056	88	55	10	18	0	5	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/1	c0003	1056	26	0	0	24	0	1	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0004	1056	25	1	1	20	0	3	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0005	1056	7	7	0	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0006	1056	5	5	0	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0007	1056	3	3	0	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0009	1056	1	0	0	1	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR2_chr6_132612150_132629275	0/0	c0010	1056	1	0	1	0	0	0	copy fasta	TAAR2	chr6	132612150	132629275
TAAR5_chr6_132583592_132594741	1/1	c0001	1014	146	12	30	83	7	12	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0002	1014	143	29	35	61	8	10	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0003	1014	108	19	14	56	1	18	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0004	1014	17	17	0	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0005	1014	13	12	1	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0006	1014	10	0	0	10	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0007	1014	2	2	0	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0008	1014	1	1	0	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0009	1014	1	0	0	1	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0010	1014	1	0	1	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0011	1014	1	0	1	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	c0012	1014	1	0	0	1	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR6_chr6_132565322_132576359	1/1	c0001	1038	389	48	74	207	17	41	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0002	1038	14	0	5	9	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0003	1038	14	13	1	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0004	1038	10	1	0	7	0	2	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0005	1038	9	9	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0006	1038	7	3	4	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0007	1038	4	1	0	2	0	1	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0008	1038	3	3	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0009	1038	3	3	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0010	1038	2	2	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0011	1038	2	2	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0012	1038	2	2	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0013	1038	2	0	1	0	1	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0014	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0015	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0016	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0017	1038	1	0	1	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0018	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0019	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0020	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359