JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAAR6_chr6_132565322_132576359	0/0	c0021	1028	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0022	1038	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0023	1038	1	1	0	0	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0024	1038	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0025	1038	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR6_chr6_132565322_132576359	0/0	c0026	1038	1	0	0	1	0	0	copy fasta	TAAR6	chr6	132565322	132576359
TAAR8_chr6_132547672_132558756	1/1	c0001	1029	396	83	81	177	13	40	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0002	1029	14	1	1	7	3	2	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0003	1029	6	0	2	4	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0004	1029	5	0	0	5	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0005	1029	3	3	0	0	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0006	1029	3	3	0	0	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0007	1029	3	3	0	0	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0008	1029	1	1	0	0	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0009	1029	1	0	0	0	0	1	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0010	1029	1	0	0	0	0	1	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0011	1029	1	0	0	1	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0012	1029	1	0	0	1	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR8_chr6_132547672_132558756	0/0	c0013	1029	1	0	0	1	0	0	copy fasta	TAAR8	chr6	132547672	132558756
TAAR9_chr6_132533277_132544336	1/1	c0001	1047	320	66	56	168	7	21	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0002	1047	68	12	20	22	2	12	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0003	1047	12	1	1	7	1	2	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0004	1047	10	7	0	0	2	1	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0005	1047	6	6	0	0	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0006	1047	6	5	1	0	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0007	1041	3	0	0	0	0	3	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0008	1047	1	0	0	0	0	1	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0010	1047	1	0	0	1	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0011	1047	1	0	0	1	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	c0012	1047	1	1	0	0	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAB1_chr22_39394780_39436882	1/1	c0001	1515	279	83	62	74	14	44	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0002	1515	10	3	0	7	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0003	1515	8	0	0	8	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0004	1515	4	0	0	4	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0005	1515	3	0	0	3	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0006	1515	2	0	0	2	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0007	1515	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0009	1515	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0010	1515	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0011	1515	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	c0012	1515	1	0	0	1	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB2_chr6_149312712_149416607	1/1	c0001	2082	275	95	55	85	10	28	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	c0002	2082	84	3	12	61	2	6	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	c0003	2082	2	0	2	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	c0004	2082	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	c0005	2082	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	c0006	2082	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	c0007	2082	1	0	1	0	0	0	copy fasta	TAB2	chr6	149312712	149416607