JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAB2_chr6_149312712_149416607	0/0	c0008	2082	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB3_chrX_30822442_30894254	1/1	c0001	2139	298	68	58	133	9	28	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	c0002	2139	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	c0003	2139	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	c0004	2139	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	c0005	2139	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAC1_chr7_97727086_97745472	1/1	c0001	390	428	94	72	204	14	42	copy fasta	TAC1	chr7	97727086	97745472
TAC3_chr12_57005000_57021529	1/1	c0001	366	334	77	77	128	12	38	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	c0002	366	13	12	1	0	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	c0003	366	1	1	0	0	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC4_chr17_49833300_49853069	1/1	c0001	324	388	95	71	167	16	37	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	c0002	320	13	0	9	4	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	c0003	324	2	2	0	0	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	c0004	324	1	0	0	1	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	c0005	324	1	0	0	0	0	1	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	c0006	324	1	1	0	0	0	0	copy fasta	TAC4	chr17	49833300	49853069
TACC1_chr8_38782236_38858028	1/0	c0001	2418	213	46	32	102	6	26	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0002	2418	65	3	8	39	5	10	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/1	c0003	2418	22	4	10	1	3	3	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0004	2418	20	19	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0005	2418	7	2	4	0	1	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0006	2418	5	5	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0007	2418	3	3	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0008	2418	2	0	0	2	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0009	2418	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0010	2418	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0011	2418	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0012	2418	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0013	2418	1	0	0	0	1	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0014	2418	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0015	2418	1	0	0	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0016	2418	1	0	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	c0017	2418	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC2_chr10_121984163_122259542	0/1	c0001	8847	57	7	4	36	1	8	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0002	8847	30	3	13	9	0	5	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0003	8847	13	0	4	5	0	4	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0004	8847	12	0	0	12	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0005	8847	8	2	2	2	0	2	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0006	8847	8	1	3	3	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0007	8847	8	1	3	0	3	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0008	8847	5	1	2	1	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0009	8847	5	4	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0010	8847	4	0	0	4	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0011	8847	4	0	1	1	0	2	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0012	8847	4	1	0	3	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0013	8847	3	3	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0014	8847	3	0	3	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0015	8847	3	3	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0016	8847	3	3	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0017	8847	3	0	2	0	1	0	copy fasta	TACC2	chr10	121984163	122259542