JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B4GALNT4_chr11_364499_387117	0/0	c0011	3120	2	2	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0012	3120	2	2	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0013	3120	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0014	3120	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0015	3120	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0016	3096	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0017	3120	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0018	3120	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0019	3120	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0020	3120	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0021	3120	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0022	3135	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0023	3120	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0024	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0025	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0026	3121	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0027	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0028	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0029	3106	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0030	3120	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0031	3120	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0032	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0033	3120	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0034	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0035	3109	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0036	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0037	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0038	3120	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	c0039	3120	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALT1_chr9_33105642_33172336	1/0	c0001	1197	339	84	67	133	12	42	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/1	c0002	1197	21	4	1	14	1	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	c0003	1197	2	2	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	c0004	1197	1	0	0	0	1	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	c0005	1197	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	c0006	1197	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	c0007	1197	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT2_chr1_43974210_43996168	1/1	c0001	1119	345	88	62	149	10	34	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0002	1119	35	2	4	27	0	2	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0003	1119	9	0	0	9	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0004	1120	6	0	3	2	0	1	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0005	1119	6	2	0	0	4	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0006	1119	1	0	0	0	0	1	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0007	1120	1	0	0	1	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0008	1119	1	0	1	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0009	1119	1	0	1	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	c0010	1119	1	0	1	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT3_chr1_161166310_161182507	1/1	c0001	1182	328	57	64	149	16	40	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	c0002	1182	30	3	2	23	2	0	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	c0003	1182	14	11	2	0	0	1	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	c0004	1182	1	0	0	0	0	1	copy fasta	B4GALT3	chr1	161166310	161182507