JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TACC2_chr10_121984163_122259542	0/0	c0118	8847	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0119	8847	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0120	8847	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0121	8847	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0122	8847	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0123	8847	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0124	8847	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0125	8847	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	c0126	8847	1	0	0	0	1	0	copy fasta	TACC2	chr10	121984163	122259542
TACC3_chr4_1716521_1750171	0/1	c0001	2517	125	16	30	56	4	18	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	1/0	c0002	2517	98	38	22	30	2	5	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0003	2517	54	6	11	24	4	9	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0004	2517	14	1	5	0	2	6	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0005	2481	10	3	1	3	0	3	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0006	2517	9	8	1	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0007	2517	4	4	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0008	2517	2	2	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0009	2517	2	1	1	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0010	2517	2	2	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0011	2517	2	0	0	2	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0012	2517	2	0	0	2	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0013	2517	2	2	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0014	2517	1	0	0	0	0	1	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0015	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0016	2517	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0017	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0018	2517	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0019	2517	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0020	2517	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0021	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0022	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0023	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0024	2517	1	0	1	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0025	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0026	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0027	2481	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0028	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0029	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0030	2517	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	c0031	2517	1	0	0	1	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACO1_chr17_63595895_63613365	1/1	c0001	894	291	85	52	104	16	32	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	c0002	894	9	8	1	0	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	c0003	894	1	1	0	0	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	c0004	894	1	0	1	0	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACR1_chr2_75041463_75204520	0/1	c0001	1224	161	66	21	56	5	12	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	1/0	c0002	1224	99	8	21	52	1	16	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	c0003	1224	16	12	0	4	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	c0004	1224	6	2	0	2	0	2	copy fasta	TACR1	chr2	75041463	75204520
TACR2_chr10_69398903_69421918	0/1	c0001	1197	145	29	33	55	11	16	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0002	1197	80	0	18	62	0	0	copy fasta	TACR2	chr10	69398903	69421918