JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TACR2_chr10_69398903_69421918	0/0	c0003	1197	54	2	14	22	4	12	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0004	1197	45	21	8	2	3	11	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0005	1197	16	15	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0006	1197	13	4	0	7	0	2	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0007	1197	6	5	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0008	1197	4	4	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0009	1197	3	3	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0010	1197	2	2	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0011	1197	2	2	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0012	1197	2	2	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0013	1197	1	0	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0015	1197	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0016	1197	1	0	0	0	0	1	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0017	1197	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0018	1197	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	1/0	c0019	1197	1	0	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0020	1197	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0021	1197	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	c0022	1197	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR3_chr4_103581031_103724985	1/1	c0001	1398	264	86	39	98	9	30	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0002	1398	3	0	0	3	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0003	1398	3	2	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0004	1398	2	0	0	2	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0005	1398	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0006	1358	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0007	1398	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0008	1398	1	0	0	0	1	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0009	1398	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0010	1398	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	c0011	1058	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACSTD2_chr1_58570433_58582252	1/1	c0001	972	301	30	61	163	15	30	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0002	972	64	24	7	31	0	2	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0003	972	30	15	9	0	0	6	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0004	972	16	9	3	0	0	4	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0005	972	7	7	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0006	972	4	0	2	0	0	2	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0007	972	3	3	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0008	972	1	0	0	1	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0009	972	1	1	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0010	972	1	0	0	0	1	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0011	972	1	1	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	c0012	972	1	0	0	1	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TADA1_chr1_166851510_166881264	1/1	c0001	1008	386	96	71	158	16	43	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	c0002	1008	27	0	2	24	0	1	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	c0003	1008	4	0	0	4	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	c0004	1008	1	0	1	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA2A_chr17_37401886_37484725	0/0	c0001	1332	286	67	60	108	11	40	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/1	c0002	1332	54	3	4	41	3	2	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	c0003	1332	7	0	0	7	0	0	copy fasta	TADA2A	chr17	37401886	37484725