JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TADA2A_chr17_37401886_37484725	0/0	c0004	1332	2	2	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	c0005	1332	1	0	0	1	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	c0006	1332	1	0	0	1	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2B_chr4_7038372_7062952	1/1	c0001	1263	415	96	74	180	16	47	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	c0002	1263	1	0	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	c0003	1263	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	c0004	1263	1	0	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	c0005	1263	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	c0006	1263	1	0	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA3_chr3_9774967_9797473	1/1	c0001	1299	399	91	67	183	18	38	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0002	1299	4	2	2	0	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0003	1299	1	0	1	0	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0004	1299	1	0	0	1	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0005	1299	1	0	0	1	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0006	1299	1	1	0	0	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0007	1299	1	0	0	0	0	1	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0008	1299	1	0	0	0	0	1	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	c0009	1299	1	0	0	1	0	0	copy fasta	TADA3	chr3	9774967	9797473
TAF10_chr11_6601294_6617216	1/1	c0001	657	383	84	68	178	13	38	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	c0002	657	56	11	12	24	3	6	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	c0003	657	4	0	4	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	c0004	657	2	0	0	0	0	2	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	c0005	657	1	0	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	c0006	657	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	c0007	657	1	0	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF11L10_chr5_17592232_17602828	0/0	c0001	597	183	53	52	40	14	24	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0002	480	148	16	20	93	4	15	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0003	597	4	4	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0004	597	4	4	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0005	597	2	2	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0006	480	1	0	0	0	0	1	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0007	480	1	0	0	1	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0008	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0009	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0010	597	1	0	0	1	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0011	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0012	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0013	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0014	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0015	597	1	1	0	0	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L10_chr5_17592232_17602828	0/0	c0016	597	1	0	0	1	0	0	copy fasta	TAF11L10	chr5	17592232	17602828
TAF11L13_chr5_17627088_17637684	0/0	c0001	597	345	69	67	151	16	42	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	1/0	c0002	597	30	15	5	6	0	3	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0003	597	6	6	0	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0004	597	5	5	0	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/1	c0005	597	5	0	0	4	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0006	597	4	0	0	4	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0007	597	4	2	2	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0008	597	3	0	1	2	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0009	597	1	0	0	1	0	0	copy fasta	TAF11L13	chr5	17627088	17637684