JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF11L13_chr5_17627088_17637684	0/0	c0010	597	1	0	0	0	0	1	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0011	597	1	0	1	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0012	597	1	0	0	0	0	1	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0013	597	1	0	0	0	0	1	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L13_chr5_17627088_17637684	0/0	c0014	597	1	1	0	0	0	0	copy fasta	TAF11L13	chr5	17627088	17637684
TAF11L14_chr5_17629460_17640053	1/1	c0001	594	236	70	52	70	13	29	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0002	594	132	3	23	83	2	21	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0003	594	14	12	2	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0004	594	7	7	0	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0005	594	4	3	1	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0006	594	2	2	0	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0007	594	1	0	0	1	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0008	594	1	0	0	0	1	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L14_chr5_17629460_17640053	0/0	c0009	594	1	1	0	0	0	0	copy fasta	TAF11L14	chr5	17629460	17640053
TAF11L2_chr5_17493231_17503827	0/0	c0001	597	192	52	48	56	13	23	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	1/0	c0002	597	170	20	18	107	3	21	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0003	597	11	0	5	6	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0004	597	8	4	2	2	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0005	597	6	0	0	6	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0006	597	4	0	0	4	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0007	597	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0008	597	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0009	597	1	1	0	0	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0010	597	1	1	0	0	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0011	597	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0012	597	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0013	597	1	0	0	1	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L2_chr5_17493231_17503827	0/0	c0014	597	1	0	1	0	0	0	copy fasta	TAF11L2	chr5	17493231	17503827
TAF11L3_chr5_17513367_17523963	0/0	c0001	597	382	64	80	180	16	42	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0002	597	15	10	1	2	0	2	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0003	597	4	0	0	4	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0004	597	3	2	1	0	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0005	597	1	0	0	1	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0006	597	1	0	0	1	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0007	597	1	0	0	0	0	1	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0008	597	1	1	0	0	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0009	597	1	1	0	0	0	0	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L3_chr5_17513367_17523963	0/0	c0010	597	1	0	0	0	0	1	copy fasta	TAF11L3	chr5	17513367	17523963
TAF11L4_chr5_17516801_17527397	0/0	c0001	597	333	57	67	153	14	42	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0002	597	5	4	1	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0003	597	4	1	0	1	0	2	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0004	597	3	0	0	3	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0005	597	2	2	0	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0006	597	1	1	0	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0007	597	1	1	0	0	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0008	597	1	0	0	1	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0009	597	1	0	0	1	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L4_chr5_17516801_17527397	0/0	c0010	597	1	0	0	1	0	0	copy fasta	TAF11L4	chr5	17516801	17527397
TAF11L8_chr5_17585364_17595960	0/0	c0001	597	89	12	14	57	0	6	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0002	597	3	3	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960