JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF1B_chr2_9838474_9939416	1/0	c0006	1767	20	18	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0007	1767	14	12	1	0	0	1	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0008	1767	6	0	0	6	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0009	1767	4	0	2	0	2	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0010	1767	3	2	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0011	1767	3	2	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0012	1767	3	0	1	0	1	1	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0013	1767	3	0	0	3	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0014	1767	3	2	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0015	1767	2	2	0	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0016	1767	2	0	0	2	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0017	1767	1	1	0	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0018	1767	1	0	0	1	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0019	1767	1	0	0	1	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0020	1767	1	0	0	0	0	1	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0021	1767	1	1	0	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1C_chr16_84172855_84192057	0/1	c0001	2532	188	46	35	86	4	16	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0002	2532	120	3	29	70	4	14	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0003	2532	25	0	2	15	5	3	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0004	2532	16	8	1	3	0	4	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0005	2532	14	0	0	12	1	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0006	2532	13	13	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0007	2532	12	0	1	10	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0008	2532	8	0	0	8	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0009	2532	7	4	1	2	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0010	2532	6	6	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0011	2532	5	2	2	0	1	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0012	2532	5	1	3	0	1	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0013	2532	4	0	0	4	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0014	2532	4	0	0	0	0	4	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0015	2532	3	2	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0016	2532	3	0	0	3	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0017	2532	3	0	0	3	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0018	2532	3	0	3	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0019	2532	3	3	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0020	2532	2	0	2	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0021	2532	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0022	2532	2	0	0	0	0	2	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0023	2532	2	1	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0024	2532	2	0	2	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0025	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0026	2532	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0027	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0028	2532	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0029	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0030	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0031	2532	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0032	2532	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0033	2532	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0034	2532	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057