JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF1C_chr16_84172855_84192057	0/0	c0035	2532	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0036	2532	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0037	2532	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0038	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0039	2532	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0040	2532	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	1/0	c0041	2532	1	0	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0042	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0043	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0044	2532	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0045	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	c0046	2532	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1D_chr11_93730567_93746495	1/1	c0001	837	420	90	68	195	18	47	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	c0002	837	3	3	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	c0003	837	1	1	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	c0004	837	1	1	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	c0005	837	1	0	0	0	0	1	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	c0006	837	1	0	0	1	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	c0007	837	1	1	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1L_chr9_32624454_32640669	1/0	c0001	5481	162	37	34	71	6	13	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0002	5481	88	7	7	66	0	8	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0003	5481	39	10	8	15	3	3	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0004	5481	14	6	1	4	1	2	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0005	5481	7	1	5	0	1	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0006	5481	7	0	7	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0007	5481	5	5	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0008	5481	5	5	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0009	5481	5	5	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0010	5481	4	4	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0011	5481	4	4	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0012	5481	3	0	0	3	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0013	5481	2	0	2	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0014	5481	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0015	5481	1	0	1	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0016	5481	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0017	5481	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/1	c0018	5481	1	0	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0019	5481	1	0	0	0	0	1	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0020	5481	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0021	5481	1	0	0	0	0	1	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0022	5481	1	0	0	0	1	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0023	5481	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0024	5481	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0025	5481	1	0	1	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	c0026	5481	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1_chrX_71361357_71471005	1/1	c0001	5622	161	41	24	71	5	18	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0002	5622	17	16	1	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0003	5622	13	0	11	0	0	2	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0004	5622	4	4	0	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0005	5622	1	1	0	0	0	0	copy fasta	TAF1	chrX	71361357	71471005