JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF1_chrX_71361357_71471005	0/0	c0006	5619	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0007	5622	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0008	5622	1	0	1	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	c0009	5623	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF2_chr8_119725774_119837841	0/0	c0001	3600	99	12	21	55	4	7	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	1/0	c0002	3600	98	14	13	57	3	10	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0003	3600	43	14	8	7	5	9	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0004	3600	22	16	6	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/1	c0005	3600	17	6	3	2	2	3	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0006	3600	12	4	1	1	0	6	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0007	3600	7	7	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0008	3600	6	6	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0009	3600	6	5	0	0	0	1	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0010	3600	2	2	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0011	3600	2	2	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0012	3600	2	0	0	0	0	2	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0013	3600	1	0	0	1	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0014	3600	1	1	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0015	3600	1	0	1	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0016	3600	1	0	1	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0017	3600	1	1	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	c0018	3600	1	0	0	1	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF3_chr10_7813505_8021631	0/0	c0001	2790	184	16	39	102	8	19	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	1/0	c0002	2790	86	27	15	31	3	9	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/1	c0003	2790	39	23	1	2	3	9	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0004	2790	8	7	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0005	2790	5	0	4	0	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0006	2790	4	0	1	2	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0007	2790	3	3	0	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0008	2790	3	3	0	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0009	2790	2	0	1	0	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0010	2790	2	0	0	2	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0011	2790	1	0	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0012	2790	1	0	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0013	2790	1	0	0	1	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0014	2790	1	0	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0015	2790	1	0	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0016	2790	1	1	0	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0017	2790	1	0	0	1	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	c0018	2790	1	0	0	1	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF4B_chr18_26221445_26396685	0/1	c0001	2589	88	8	21	41	4	13	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	1/0	c0002	2589	41	27	9	2	1	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0003	2589	41	9	15	14	0	3	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0004	2589	37	4	11	11	3	8	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0005	2589	34	19	1	12	0	2	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0006	2589	8	2	4	0	2	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0007	2589	5	5	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0008	2589	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0009	2589	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0010	2589	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685