JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF4B_chr18_26221445_26396685	0/0	c0011	2589	2	0	0	2	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0012	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0013	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0014	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0015	2589	1	0	0	1	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0016	2589	1	0	0	1	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0017	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0018	2589	1	0	1	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0019	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0020	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0021	2589	1	0	0	0	0	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0022	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	c0023	2589	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4_chr20_61969798_62070881	0/0	c0001	3252	114	28	24	44	7	11	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0002	3252	64	1	17	35	3	8	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0003	3252	34	26	6	2	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0004	3252	21	0	11	7	3	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0005	3252	17	10	5	0	2	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0006	3243	8	0	0	7	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0007	3253	7	1	2	2	0	2	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0008	3252	6	0	0	6	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0009	3252	4	4	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0010	3252	4	0	0	0	0	4	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0011	3252	3	0	1	1	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0012	3240	3	1	2	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0013	3252	3	0	0	1	0	2	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/1	c0014	3252	2	0	0	0	1	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0015	3252	2	1	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0016	3252	2	0	0	2	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0017	3258	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0018	3258	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0019	3228	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0020	3253	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0021	3253	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0022	3253	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0023	3252	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0024	3252	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0025	3252	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0026	3252	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0027	3252	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0028	3252	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0029	3252	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0030	3252	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0031	3243	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0032	3252	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0033	3246	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0034	3234	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	1/0	c0035	3258	1	0	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	c0036	3253	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF5L_chr1_229588134_229631122	0/0	c0001	1770	119	24	23	60	2	10	copy fasta	TAF5L	chr1	229588134	229631122