JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B4GALT3_chr1_161166310_161182507	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT4_chr3_119206742_119245878	1/1	c0001	1035	206	58	36	81	10	19	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0002	1035	137	27	23	71	1	15	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0003	1035	82	1	17	53	5	6	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0004	1035	3	3	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0005	1035	3	3	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0006	1035	2	0	0	0	0	2	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0008	1035	1	0	0	1	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	c0009	1035	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT5_chr20_49627945_49718878	0/0	c0001	1167	127	36	20	60	3	8	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/1	c0002	1167	108	20	15	54	5	13	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	1/0	c0003	1167	68	12	14	33	3	5	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	c0004	1167	26	0	4	20	0	2	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	c0005	1167	18	0	0	18	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	c0006	1167	6	1	4	0	1	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	c0007	1167	5	4	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	c0008	1167	5	5	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	c0009	1167	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT6_chr18_31617246_31689581	1/1	c0001	1149	296	71	57	132	10	24	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	c0002	1149	5	5	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	c0003	1149	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	c0004	1149	1	0	1	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	c0005	1149	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	c0006	1149	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	c0007	1149	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT7_chr5_177595132_177615330	0/1	c0001	984	276	44	46	156	9	20	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	1/0	c0002	984	95	19	19	31	5	20	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0003	984	43	16	13	6	3	5	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0004	984	27	7	4	15	1	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0005	984	9	8	1	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0006	984	2	0	2	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0007	984	1	1	0	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0008	984	1	0	0	1	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0009	984	1	0	0	1	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0010	984	1	1	0	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0011	984	1	0	0	0	0	1	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	c0012	984	1	0	1	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GAT1_chr11_66340374_66352629	1/1	c0001	1248	334	55	67	159	16	35	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	c0002	1248	72	29	7	33	2	1	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	c0003	1248	2	2	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	c0004	1248	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	c0005	1248	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	c0006	1248	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	c0007	1248	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B9D1_chr17_19338175_19367723	1/1	c0001	615	338	82	58	143	10	43	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	c0002	615	13	8	1	1	0	3	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	c0003	615	3	2	1	0	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D2_chr19_41349417_41369149	0/1	c0001	528	220	64	42	78	6	29	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	1/0	c0002	528	137	17	32	68	6	13	copy fasta	B9D2	chr19	41349417	41369149