JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF5L_chr1_229588134_229631122	0/1	c0002	1770	105	9	14	62	4	15	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0003	1770	84	41	10	22	0	11	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	1/0	c0004	1770	52	5	19	10	7	10	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0005	1770	4	4	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0006	1770	4	4	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0007	1770	2	1	1	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0008	1770	1	0	0	1	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0009	1770	1	0	0	0	1	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0010	1770	1	1	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0011	1770	1	0	1	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0012	1770	1	0	0	1	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	c0013	1770	1	1	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5_chr10_103362976_103394065	1/1	c0001	2403	243	73	42	96	10	20	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0002	2403	138	12	29	87	3	7	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0003	2403	5	5	0	0	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0004	2403	3	3	0	0	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0005	2403	3	0	0	3	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0006	2403	2	0	1	0	1	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0007	2403	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0008	2403	1	0	0	0	0	1	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0009	2403	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0010	2403	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0011	2403	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	c0012	2403	1	1	0	0	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF6L_chr11_62766396_62792342	1/1	c0001	1869	333	71	61	149	15	35	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	c0002	1869	11	11	0	0	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	c0003	1869	2	1	1	0	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	c0004	1869	1	0	0	0	1	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	c0005	1869	1	0	0	1	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	c0006	1869	1	1	0	0	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	c0007	1869	1	0	0	0	0	1	copy fasta	TAF6L	chr11	62766396	62792342
TAF6_chr7_100102070_100124358	1/1	c0001	2034	375	77	66	169	16	45	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0002	2034	10	10	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0003	2034	6	0	0	6	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0004	2034	4	0	0	4	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0005	2034	3	0	0	0	0	3	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0006	2034	2	2	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0007	2034	1	1	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0008	2068	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0009	2034	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0010	2034	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0011	2034	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0012	2024	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0013	2034	1	1	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	c0014	2034	1	1	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF7L_chrX_101263257_101296334	1/0	c0001	1131	177	47	28	76	5	20	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	c0002	1131	76	16	15	38	4	3	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/1	c0003	1125	26	9	5	3	3	5	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	c0004	1131	2	2	0	0	0	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	c0005	1122	2	0	2	0	0	0	copy fasta	TAF7L	chrX	101263257	101296334