JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF7L_chrX_101263257_101296334	0/0	c0006	1131	2	0	1	0	1	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7_chr5_141313490_141325784	1/1	c0001	1050	394	89	83	168	16	36	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	c0002	1050	26	9	1	16	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF8_chr6_42045524_42088272	0/0	c0001	933	332	35	62	190	13	32	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	1/1	c0002	933	119	59	18	23	5	12	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	c0003	933	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	c0004	933	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	c0005	933	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF9B_chrX_78124748_78144650	1/1	c0001	756	315	76	46	150	9	32	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	c0002	757	1	0	0	1	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	c0003	756	1	0	1	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	c0004	756	1	0	1	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9_chr5_69359743_69374520	0/1	c0001	795	432	95	77	204	14	41	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	c0002	795	4	0	2	0	0	2	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	c0003	795	1	0	1	0	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	c0004	795	1	0	0	0	0	1	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	c0005	795	1	1	0	0	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	c0006	795	1	0	0	1	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	c0007	795	1	0	0	1	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAFA1_chr3_67999247_68550621	0/0	c0001	402	156	60	32	38	4	22	copy fasta	TAFA1	chr3	67999247	68550621
TAFA2_chr12_61703273_62197773	0/0	c0001	396	218	76	48	66	8	20	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	c0002	396	2	0	0	2	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA3_chr1_112713905_112732235	1/1	c0001	402	404	94	72	184	8	44	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0002	402	12	1	4	0	4	3	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0003	402	2	2	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0004	402	1	0	0	1	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0005	402	1	0	0	0	0	1	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0006	402	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0007	402	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0008	402	1	0	0	1	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	c0009	402	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA4_chr3_68726766_68937547	1/1	c0001	423	312	80	54	132	12	32	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	c0002	423	3	0	0	3	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	c0003	423	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA5_chr22_48484553_48756932	1/1	c0001	399	254	81	54	81	10	26	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	c0002	399	2	0	0	0	0	2	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	c0003	399	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	c0004	399	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFAZZIN_chrX_154406539_154426726	1/1	c0001	879	276	67	58	109	11	29	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	c0002	879	4	3	1	0	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	c0003	880	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	c0004	881	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	c0005	879	1	0	0	0	0	1	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	c0006	880	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	c0007	882	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAGAP_chr6_159029481_159049991	1/1	c0001	2196	364	90	63	163	7	39	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0002	2196	5	0	0	5	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0003	2196	4	2	2	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0004	2196	4	0	3	0	1	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0005	2196	2	2	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991