JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAGAP_chr6_159029481_159049991	0/0	c0006	2196	1	0	0	0	0	1	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0007	2196	1	0	0	0	0	1	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0008	2196	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0009	2196	1	0	1	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0010	2196	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0011	2196	1	0	1	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0012	2196	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0013	2196	1	0	0	0	0	1	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0014	2196	1	1	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0015	2196	1	1	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	c0016	2196	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGLN2_chr1_159913111_159930507	1/1	c0001	600	436	96	79	200	16	43	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	c0002	600	8	0	1	3	0	4	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	c0003	600	1	0	0	0	0	1	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	c0004	600	1	0	0	1	0	0	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN3_chr3_111993922_112018885	1/1	c0001	600	372	92	67	159	14	38	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	c0002	600	83	0	14	61	2	6	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	c0003	600	6	6	0	0	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	c0004	600	3	0	1	0	0	2	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN_chr11_117194370_117212464	1/1	c0001	606	401	74	78	187	15	45	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	c0002	606	45	7	5	27	1	5	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	c0003	606	9	8	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	c0004	606	4	3	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	c0005	606	1	0	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAL1_chr1_47211291_47237225	1/1	c0001	996	385	81	66	182	18	36	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0002	996	12	4	3	0	0	5	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0003	996	5	4	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0004	996	4	0	0	2	0	2	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0005	996	4	4	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0006	984	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0007	996	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0008	996	1	0	0	0	0	1	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	c0009	996	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL2_chr9_105657457_105668124	1/1	c0001	327	415	97	77	177	18	44	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	c0002	327	1	0	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	c0003	327	1	0	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	c0004	327	1	1	0	0	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	c0005	327	1	0	1	0	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	c0006	327	1	0	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TALDO1_chr11_742464_770012	1/1	c0001	1014	408	90	72	179	18	47	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	c0002	1014	3	3	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	c0003	1014	1	0	1	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	c0004	1014	1	0	0	0	0	1	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	c0007	1014	1	0	1	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TAMALIN_chr12_52001946_52020889	1/1	c0001	1188	329	83	54	142	11	37	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0002	1189	33	7	8	14	0	4	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0003	1188	6	0	1	0	3	2	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0004	1188	2	0	1	0	1	0	copy fasta	TAMALIN	chr12	52001946	52020889