JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAMALIN_chr12_52001946_52020889	0/0	c0005	1188	1	0	0	0	1	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0006	1189	1	0	0	0	0	1	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0007	1188	1	0	1	0	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0008	1188	1	0	0	1	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0009	1188	1	0	0	0	0	1	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0011	1188	1	0	0	1	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0012	1188	1	0	1	0	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0013	1189	1	0	0	1	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	c0014	1188	1	0	0	0	0	1	copy fasta	TAMALIN	chr12	52001946	52020889
TAMM41_chr3_11785442_11851885	1/0	c0001	1014	193	40	31	100	4	17	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0002	1014	86	29	23	18	7	9	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0003	1014	43	5	2	26	1	9	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0004	1014	30	9	9	7	2	3	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/1	c0005	1014	8	0	2	2	3	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0006	1014	3	0	1	0	1	1	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0007	1014	2	2	0	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0008	1014	2	0	1	0	0	1	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0009	1014	2	2	0	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0010	1014	1	1	0	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0011	1014	1	0	1	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	c0012	1014	1	0	0	1	0	0	copy fasta	TAMM41	chr3	11785442	11851885
TANC1_chr2_158963640_159237659	0/0	c0001	5586	75	25	9	24	3	14	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0002	5586	66	8	20	26	5	7	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0003	5586	39	8	2	23	2	4	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0004	5586	13	0	7	0	4	2	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	1/0	c0005	5586	6	4	0	0	0	1	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0006	5586	6	6	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0007	5586	6	0	2	2	0	2	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0008	5586	6	1	0	5	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0009	5586	5	0	0	5	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0010	5586	4	0	3	0	0	1	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0011	5586	3	3	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/1	c0012	5586	3	0	2	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0013	5586	2	2	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0014	5586	2	2	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0015	5586	2	0	2	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0016	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0017	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0018	5586	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0019	5586	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0020	5586	1	0	0	0	0	1	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0021	5586	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0022	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0023	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0024	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0025	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0026	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0027	5586	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0028	5586	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659