JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TANK_chr2_161155428_161241230	0/0	c0006	1278	2	0	0	0	2	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0007	1278	1	0	0	1	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0008	1278	1	0	0	1	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0009	1278	1	0	0	0	0	1	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0010	1278	1	0	1	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0011	1278	1	1	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TAOK1_chr17_29385363_29556903	0/0	c0001	3006	170	56	30	61	6	17	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	1/0	c0002	3006	73	11	8	41	4	8	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/1	c0003	3006	63	13	25	1	7	16	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0004	3006	8	8	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0005	3006	4	0	0	4	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0006	3006	2	0	0	1	0	1	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0007	3006	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0008	3006	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0009	3006	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0010	3006	1	0	0	0	1	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	c0011	3006	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK2_chr16_29968868_29993393	1/0	c0001	3708	169	40	40	69	4	15	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/1	c0002	3708	95	12	12	55	4	11	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0003	3708	25	0	3	22	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0004	3708	19	10	5	0	4	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0005	3708	12	9	1	2	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0006	3708	4	3	1	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0007	3708	4	4	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0008	3708	3	3	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0009	3708	3	0	0	0	0	3	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0010	3708	3	0	0	0	2	1	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0011	3708	1	1	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0012	3708	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0013	3708	1	0	1	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0014	3708	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0015	3708	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0016	3708	1	1	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0017	3708	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0018	3708	1	0	1	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	c0019	3708	1	1	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK3_chr12_118144801_118377907	0/1	c0001	2697	213	57	33	94	9	19	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	1/0	c0002	2697	92	20	13	47	5	6	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	c0003	2697	4	4	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	c0004	2697	2	0	0	2	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	c0005	2697	1	0	0	1	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	c0006	2697	1	0	0	0	0	1	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	c0007	2697	1	1	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAP1_chr6_32840209_32858704	0/1	c0001	2247	360	57	70	184	14	34	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0002	2247	52	5	9	30	1	7	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0003	2247	11	9	2	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0004	2247	8	1	0	6	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0005	2247	6	5	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0006	2247	6	6	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0007	2247	5	2	2	0	0	1	copy fasta	TAP1	chr6	32840209	32858704