JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAP1_chr6_32840209_32858704	0/0	c0008	2247	4	0	0	4	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0009	2247	3	3	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0010	2247	3	0	0	0	1	2	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0011	2247	3	2	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0012	2247	2	2	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0013	2247	2	0	2	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0014	2247	1	0	0	1	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0015	2247	1	0	0	1	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0016	2247	1	1	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0017	2247	1	0	0	0	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0018	2247	1	0	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0019	2247	1	1	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0020	2247	1	0	0	0	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	c0021	2247	1	0	0	0	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP2_chr6_32820415_32843739	0/0	c0001	2061	105	34	23	29	6	13	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0002	2061	63	7	12	34	0	10	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0003	2061	47	0	16	31	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0004	2061	45	1	6	30	3	5	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0005	2061	40	12	2	24	1	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0006	2061	36	2	10	14	0	10	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/1	c0007	2061	26	8	3	13	1	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0008	2061	17	0	4	11	1	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0009	2061	15	0	3	12	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0010	2061	13	2	4	3	3	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0011	2061	10	0	0	10	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0012	2061	7	7	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0013	2061	4	3	1	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0014	2061	4	0	0	4	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0015	2061	4	0	2	0	2	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0016	2061	4	0	0	4	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0017	2061	4	4	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0018	2061	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0019	2061	3	0	0	3	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0020	2061	3	1	0	1	1	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0021	2061	3	0	0	0	0	3	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0022	2061	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0023	2061	2	2	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0024	2061	2	2	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0025	2061	2	2	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0026	2061	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0027	2061	1	0	1	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0028	2061	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0029	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0030	2061	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0031	2061	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0032	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0033	2061	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0035	2061	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0036	2061	1	0	1	0	0	0	copy fasta	TAP2	chr6	32820415	32843739