JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAP2_chr6_32820415_32843739	0/0	c0037	2061	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0038	2061	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0039	2061	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0040	2061	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0041	2061	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0042	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0043	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0044	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	c0045	2061	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAPBPL_chr12_6447042_6467316	1/0	c0001	1407	133	35	32	46	3	16	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0002	1407	109	34	13	50	3	9	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/1	c0003	1407	109	2	15	74	9	8	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0004	1407	56	3	7	38	0	8	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0005	1407	16	0	8	2	3	3	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0006	1407	11	10	0	0	0	1	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0007	1407	10	10	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0008	1407	3	0	2	1	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0009	1407	2	0	2	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0010	1407	2	0	0	2	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0011	1407	2	0	0	0	0	2	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0012	1407	2	0	0	2	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0013	1407	1	0	0	0	0	1	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0014	1407	1	1	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0015	1407	1	1	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0016	1407	1	0	0	1	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	c0017	1407	1	0	1	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBP_chr6_33294694_33319078	0/0	c0001	1347	188	42	36	75	7	28	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/1	c0002	1347	155	28	31	80	6	9	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0003	1347	15	11	4	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0004	1347	11	11	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0005	1347	3	0	0	3	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0006	1347	3	1	1	0	0	1	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0007	1347	2	0	0	2	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0008	1335	2	2	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0009	1347	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0010	1347	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0011	1347	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0012	1347	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0013	1347	1	0	0	0	1	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	c0014	1347	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPT1_chr4_16155505_16231471	1/1	c0001	1704	311	38	58	159	9	45	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0002	1704	37	27	1	9	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0003	1704	15	15	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0004	1704	5	5	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0005	1704	4	4	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0006	1704	3	2	1	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0007	1704	2	0	0	0	0	2	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0008	1704	1	0	0	0	0	1	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0009	1704	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0010	1704	1	1	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471