JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAPT1_chr4_16155505_16231471	0/0	c0011	1704	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	c0012	1704	1	0	0	0	1	0	copy fasta	TAPT1	chr4	16155505	16231471
TARBP1_chr1_234386313_234484179	1/1	c0001	4866	29	10	6	7	0	4	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0002	4866	15	1	8	0	1	5	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0003	4866	12	0	6	3	1	2	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0004	4866	11	0	0	11	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0005	4866	10	0	1	7	0	2	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0006	4866	9	4	2	0	2	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0007	4866	7	0	0	7	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0008	4866	7	0	2	5	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0009	4866	6	5	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0010	4866	6	5	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0011	4866	6	0	2	1	0	3	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0012	4866	6	0	0	5	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0013	4866	5	2	2	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0014	4866	5	1	1	0	3	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0015	4866	5	0	3	0	2	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0016	4866	5	0	5	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0017	4866	4	0	0	4	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0018	4866	4	0	1	2	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0019	4866	4	0	3	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0020	4866	4	0	0	3	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0021	4866	3	3	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0022	4866	3	3	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0023	4866	3	3	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0024	4866	3	0	0	3	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0025	4866	3	3	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0026	4866	3	3	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0027	4866	3	0	0	3	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0028	4866	2	0	0	2	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0029	4866	2	1	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0030	4866	2	0	0	2	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0031	4866	2	1	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0032	4866	2	2	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0033	4866	2	0	0	0	0	2	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0034	4866	2	0	1	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0035	4866	2	2	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0036	4866	2	0	0	2	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0037	4866	2	2	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0038	4866	2	0	1	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0039	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0040	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0041	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0042	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0043	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0044	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0045	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0046	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0047	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0048	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179