JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TARBP1_chr1_234386313_234484179	0/0	c0049	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0050	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0051	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0052	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0053	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0054	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0055	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0056	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0057	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0058	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0059	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0060	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0061	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0062	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0063	4866	1	0	0	0	1	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0064	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0065	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0066	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0067	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0068	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0069	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0070	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0071	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0072	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0073	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0074	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0075	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0076	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0077	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0078	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0079	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0080	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0081	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0082	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0083	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0084	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0085	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0086	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0087	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0088	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0089	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0090	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0091	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0092	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0093	4866	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0094	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0095	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0096	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0097	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0098	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179