Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABI3_chr17_49205707_49228225	1/0	c0011	1101	1	0	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0012	1101	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0013	1101	1	0	0	1	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABITRAM_chr9_108929400_108945954	1/1	c0001	546	449	94	78	221	13	41	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	c0002	546	7	2	2	0	2	1	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	c0003	546	1	0	0	0	1	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	c0004	546	1	0	0	1	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABL1_chr9_130830254_130892675	0/0	c0001	3393	133	31	38	48	5	11	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	1/1	c0002	3393	65	8	11	29	2	13	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0003	3393	28	21	5	0	1	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0004	3393	8	6	1	0	0	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0005	3393	6	3	3	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0006	3393	5	5	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0007	3393	5	0	5	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0008	3393	3	3	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0009	3393	3	3	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0010	3393	3	0	1	2	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0011	3393	3	2	0	1	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0012	3393	2	0	2	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0013	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0014	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0015	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0016	3393	1	0	0	1	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0017	3393	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0018	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0019	3393	1	0	0	0	0	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0020	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0021	3393	1	0	0	1	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0022	3393	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0023	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0024	3393	1	0	0	0	0	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0025	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	c0026	3393	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL2_chr1_179094330_179234677	1/1	c0001	3549	286	70	45	127	9	33	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0002	3549	19	2	5	10	2	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0003	3549	18	0	5	12	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0004	3549	7	7	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0005	3549	4	2	2	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0006	3549	4	0	0	4	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0007	3549	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0008	3549	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0009	3549	2	0	2	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0010	3549	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0011	3549	1	0	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0012	3549	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0013	3549	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0014	3549	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	c0015	3549	1	1	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABLIM1_chr10_114426112_114663275	0/1	c0001	2337	81	21	16	32	4	7	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0002	2337	73	32	17	21	3	0	copy fasta	ABLIM1	chr10	114426112	114663275