JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B9D2_chr19_41349417_41369149	0/0	c0003	528	2	0	0	2	0	0	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	c0004	528	1	1	0	0	0	0	copy fasta	B9D2	chr19	41349417	41369149
BAALC_chr8_103135725_103235305	1/1	c0001	438	317	69	62	128	14	42	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	c0002	438	5	5	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	c0003	438	5	1	0	2	2	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	c0004	438	4	4	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	c0005	438	1	1	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAAT_chr9_101355417_101390006	0/1	c0001	1257	196	27	34	105	11	18	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	1/0	c0002	1257	129	32	19	58	2	17	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0003	1257	70	21	13	25	1	10	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0004	1257	8	0	0	8	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0005	1257	5	5	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0006	1257	3	3	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0007	1257	1	0	1	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0008	1257	1	0	1	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0009	1257	1	0	0	1	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0010	1257	1	0	0	0	0	1	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0011	1257	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0012	1257	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	c0013	1257	1	0	0	1	0	0	copy fasta	BAAT	chr9	101355417	101390006
BABAM1_chr19_17262443_17284337	1/1	c0001	990	388	74	71	185	15	41	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	c0002	990	29	16	5	0	3	5	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	c0003	990	3	3	0	0	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	c0004	990	2	2	0	0	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	c0005	990	1	0	0	1	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	c0006	990	1	1	0	0	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM2_chr2_27885729_28343901	1/1	c0001	1152	157	68	37	32	2	16	copy fasta	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	c0002	1152	1	0	1	0	0	0	copy fasta	BABAM2	chr2	27885729	28343901
BACE1_chr11_117280698_117321256	0/1	c0001	1506	210	47	42	87	7	26	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	1/0	c0002	1506	177	44	32	75	11	14	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0003	1506	5	0	2	0	0	3	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0004	1506	3	0	0	3	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0005	1506	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0006	1506	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0007	1506	1	0	0	1	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0008	1506	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	c0009	1506	1	0	0	0	0	1	copy fasta	BACE1	chr11	117280698	117321256
BACE2_chr21_41163160_41287530	1/1	c0001	1557	179	81	36	32	9	19	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	c0002	1557	88	9	28	31	3	17	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	c0003	1557	2	2	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	c0004	1557	1	0	0	1	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	c0005	1557	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	c0006	1557	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACH1_chr21_29293922_29351148	1/0	c0001	2211	176	23	38	96	4	14	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/1	c0002	2211	169	37	38	66	6	21	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	c0003	2211	16	14	2	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	c0004	2211	3	3	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	c0005	2211	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	c0006	2211	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	c0007	2211	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148