JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TARBP1_chr1_234386313_234484179	0/0	c0099	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0100	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0101	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0102	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0103	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0104	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0105	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0106	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0107	4866	1	0	0	1	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0108	4866	1	0	0	0	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	c0109	4866	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP2_chr12_53496283_53511431	1/1	c0001	1101	324	83	66	115	14	44	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	c0002	1101	6	6	0	0	0	0	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	c0003	1101	1	0	0	0	0	1	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	c0004	1101	1	0	0	0	0	1	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	c0005	1101	1	0	0	1	0	0	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	c0006	1101	1	1	0	0	0	0	copy fasta	TARBP2	chr12	53496283	53511431
TARDBP_chr1_11007654_11030492	1/1	c0001	1245	352	91	62	149	10	38	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	c0002	1245	4	0	0	4	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	c0003	1245	2	2	0	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	c0004	1245	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	c0005	1245	1	1	0	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARM1_chr19_54064895_54086365	0/1	c0001	816	356	88	62	156	12	37	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0002	816	20	0	9	8	2	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0003	816	10	0	2	7	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0004	816	5	5	0	0	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0005	816	4	0	2	0	0	2	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0006	816	3	2	1	0	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0007	816	2	0	0	0	0	2	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0008	816	2	0	0	2	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0009	816	1	0	0	1	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0010	816	1	0	0	1	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0011	816	1	0	0	0	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0012	816	1	0	0	0	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0013	816	1	0	0	0	0	1	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0014	816	1	0	0	1	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARM1_chr19_54064895_54086365	0/0	c0015	816	1	1	0	0	0	0	copy fasta	TARM1	chr19	54064895	54086365
TARP_chr7_38254643_38278636	1/0	c0001	177	356	74	66	169	12	34	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	c0002	177	88	15	10	47	4	12	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	c0003	177	5	5	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	c0004	177	5	4	1	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	c0005	177	2	0	0	0	0	2	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	c0006	177	1	0	1	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARS1_chr5_33435965_33473086	1/0	c0001	2172	254	57	43	111	8	34	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/1	c0002	2172	69	14	10	36	3	5	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0003	2172	64	9	5	43	1	6	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0004	2172	7	7	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0005	2172	3	1	2	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0006	2172	2	2	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0007	2172	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086