JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TARS1_chr5_33435965_33473086	0/0	c0008	2172	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0009	2172	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0010	2172	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0011	2172	1	0	0	0	0	1	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0012	2172	1	0	0	0	0	1	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0013	2172	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0014	2187	1	0	1	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0015	2172	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0016	2172	1	0	0	0	0	1	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0017	2172	1	0	0	1	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0018	2172	1	0	0	1	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	c0019	2172	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS2_chr1_150482419_150512602	1/1	c0001	2157	346	73	57	157	14	43	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	c0002	2157	39	10	7	22	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	c0003	2157	7	6	1	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	c0004	2157	5	0	3	1	0	1	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	c0005	2157	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	c0006	2157	1	1	0	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	c0007	2157	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS3_chr15_101648596_101729473	1/0	c0001	2409	106	36	26	31	2	10	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/1	c0002	2409	82	7	17	46	3	8	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0003	2409	49	21	18	0	5	5	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0004	2409	24	6	0	8	2	8	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0005	2409	4	3	0	0	0	1	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0006	2409	4	4	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0007	2409	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0008	2409	1	0	0	1	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0009	2409	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0010	2409	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0011	2409	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0012	2409	1	0	0	0	0	1	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0013	2409	1	0	1	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0014	2409	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	c0015	2409	1	0	0	0	0	1	copy fasta	TARS3	chr15	101648596	101729473
TAS1R1_chr1_6550307_6584755	0/1	c0001	2526	240	39	57	93	12	38	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0002	2526	67	4	7	53	0	3	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	1/0	c0003	2526	24	22	1	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0004	2526	13	0	0	13	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0005	2526	9	9	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0006	2526	4	4	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0007	2526	4	4	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0008	2526	4	0	3	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0009	2526	3	2	0	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0010	2526	3	0	0	3	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0011	2526	3	3	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0012	2526	2	1	0	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0013	2526	2	2	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0014	2526	2	0	1	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0015	2526	2	0	2	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0016	2526	2	0	2	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755