JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS1R1_chr1_6550307_6584755	0/0	c0017	2526	2	2	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0018	2526	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0019	2526	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0020	2526	1	0	0	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0021	2526	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0022	2526	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0023	2526	1	0	0	0	1	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0024	2526	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0025	2526	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0026	2526	1	0	0	0	1	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0027	2526	1	0	1	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0028	2526	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0029	2526	1	1	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0030	2526	1	0	0	1	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	c0031	2526	1	0	0	0	0	1	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R2_chr1_18834599_18864660	0/0	c0001	2520	132	21	27	65	5	14	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0002	2520	76	7	6	46	3	14	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0003	2520	28	1	1	24	0	2	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0004	2520	21	0	2	16	0	3	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0005	2520	17	4	4	1	7	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/1	c0006	2520	17	10	6	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	1/0	c0007	2520	15	3	0	9	0	2	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0008	2520	11	0	4	3	0	4	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0009	2520	11	10	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0010	2520	10	1	3	6	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0011	2520	10	2	5	0	0	3	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0012	2520	6	0	0	6	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0013	2520	5	0	0	5	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0014	2520	4	2	0	0	2	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0015	2520	4	4	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0016	2520	3	0	0	2	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0017	2520	3	1	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0018	2520	3	0	0	3	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0019	2520	3	0	2	0	1	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0020	2520	3	1	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0021	2520	3	3	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0022	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0023	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0024	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0025	2520	2	0	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0026	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0027	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0028	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0029	2520	2	2	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0030	2520	2	0	2	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0031	2520	2	0	1	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0032	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0033	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0034	2520	1	0	0	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0035	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660