JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS1R2_chr1_18834599_18864660	0/0	c0036	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0037	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0038	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0039	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0040	2520	1	0	0	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0041	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0042	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0043	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0044	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0045	2520	1	0	0	0	0	1	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0046	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0047	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0048	2520	1	0	0	1	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0049	2520	1	0	0	1	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0050	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0051	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0052	2520	1	0	1	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0053	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R2_chr1_18834599_18864660	0/0	c0054	2520	1	1	0	0	0	0	copy fasta	TAS1R2	chr1	18834599	18864660
TAS1R3_chr1_1326280_1340314	0/0	c0001	2559	235	29	58	102	14	32	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	1/0	c0002	2559	39	3	2	29	0	4	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0003	2559	35	23	3	7	1	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0004	2559	21	20	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0005	2559	9	0	0	7	1	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0006	2559	5	0	1	4	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0007	2559	3	3	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0008	2559	3	3	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/1	c0009	2559	2	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0010	2559	2	1	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0011	2559	2	0	2	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0012	2559	2	0	1	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0013	2559	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0014	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0015	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0016	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0017	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0018	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0019	2559	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0020	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0021	2559	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0022	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0023	2559	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0024	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0025	2559	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0026	2580	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0027	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0028	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0029	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0030	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0031	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314