JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS1R3_chr1_1326280_1340314	0/0	c0032	2559	1	0	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0033	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0034	2559	1	0	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0035	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0036	2559	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0037	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0038	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0039	2559	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	c0040	2559	1	0	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS2R10_chr12_10820219_10831358	0/1	c0001	924	361	50	73	175	18	44	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0002	924	27	21	6	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0003	924	18	16	0	0	0	2	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0004	924	5	0	0	5	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0005	924	3	0	0	3	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0006	924	2	2	0	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0007	924	1	1	0	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0008	924	1	0	0	1	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0009	924	1	0	0	1	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0010	924	1	0	1	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	c0011	924	1	0	0	1	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R13_chr12_10902926_10914562	0/0	c0001	912	232	19	38	143	7	25	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/1	c0002	912	170	67	33	48	6	15	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	c0003	912	2	0	1	0	1	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	c0004	912	1	0	0	1	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	c0005	912	1	0	1	0	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	c0006	912	1	0	1	0	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R14_chr12_10932410_10944263	0/0	c0001	954	231	28	36	127	8	32	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/1	c0002	954	87	20	20	37	2	7	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0003	954	76	37	20	9	4	6	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0004	954	6	3	3	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0005	954	4	1	1	0	0	2	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0006	954	2	0	2	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0007	954	2	2	0	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0008	954	1	1	0	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0009	954	1	0	0	0	0	1	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	c0010	954	1	0	0	1	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R16_chr7_122989704_123000700	0/0	c0001	876	273	62	60	116	8	27	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	1/0	c0002	876	109	3	14	69	4	18	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0003	876	18	17	1	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0004	876	9	9	0	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0005	876	1	1	0	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0006	876	1	0	0	0	0	1	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0007	876	1	0	0	1	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0008	876	1	0	1	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/1	c0009	876	1	0	0	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0010	876	1	0	0	1	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	c0011	876	1	0	0	1	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R19_chr12_11016619_11027620	0/0	c0001	900	142	7	16	101	4	14	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/1	c0002	900	117	34	31	35	4	12	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0003	900	99	40	21	21	5	12	copy fasta	TAS2R19	chr12	11016619	11027620