JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS2R19_chr12_11016619_11027620	0/0	c0004	900	39	1	4	28	0	6	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0005	900	12	8	4	0	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0006	900	4	1	1	0	0	2	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0007	900	1	0	0	1	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0008	900	1	1	0	0	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0009	900	1	0	1	0	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	c0010	900	1	0	0	0	1	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R1_chr5_9622347_9635351	1/1	c0001	900	286	76	65	97	11	35	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0002	900	107	11	5	90	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0003	900	52	5	9	28	3	7	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0004	900	7	0	2	0	2	3	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0005	900	3	3	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0006	900	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0007	900	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	c0008	900	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R20_chr12_10990961_11003304	0/0	c0001	930	136	4	18	92	3	19	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0002	930	107	53	35	6	6	7	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/1	c0003	930	87	21	16	39	2	8	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0004	930	73	6	7	51	3	6	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0005	930	6	3	3	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0006	930	2	2	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0007	930	2	2	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0008	930	2	0	0	2	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0009	930	2	0	0	0	0	2	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0010	930	1	0	1	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	c0011	930	1	1	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R30_chr12_11127958_11139644	0/0	c0001	960	261	57	38	124	10	32	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/1	c0002	960	117	32	30	39	4	11	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	c0003	960	2	2	0	0	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	c0004	960	2	1	1	0	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	c0005	960	1	0	0	0	0	1	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	c0006	960	1	0	1	0	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	c0007	960	1	0	0	1	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R31_chr12_11025387_11036407	0/0	c0001	930	204	6	23	147	6	22	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/1	c0002	930	84	24	12	37	2	8	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0003	930	77	36	12	20	2	7	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0004	930	35	11	18	0	2	4	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0005	930	26	7	10	0	4	5	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0006	930	6	6	0	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0007	930	3	0	1	0	0	2	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0008	930	3	0	0	3	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0009	930	1	0	0	1	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0010	930	1	1	0	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0011	930	1	0	0	1	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0012	930	1	0	0	1	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	c0013	918	1	1	0	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R38_chr7_141967631_141978773	0/0	c0001	1002	219	38	50	110	6	15	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/1	c0002	1002	172	35	21	81	8	26	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0003	1002	16	0	5	11	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	1/0	c0004	1002	15	14	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773