JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS2R38_chr7_141967631_141978773	0/0	c0005	1002	8	0	3	0	0	5	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0006	1002	2	2	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0007	1002	1	0	1	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0010	1002	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0011	1002	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	c0012	1002	1	0	0	1	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R39_chr7_143178419_143189435	1/1	c0001	1017	358	91	68	151	10	36	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	c0002	1017	3	3	0	0	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	c0003	1017	2	2	0	0	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	c0004	1017	2	2	0	0	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	c0005	1017	1	0	0	1	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	c0006	1017	1	0	0	1	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	c0007	1017	1	0	0	1	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R3_chr7_141759097_141770197	1/1	c0001	951	196	71	35	63	6	19	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0002	951	182	17	34	109	8	14	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0003	951	25	3	0	15	0	7	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0004	951	3	0	0	2	0	1	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0005	951	1	1	0	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0006	951	1	0	0	0	0	1	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0007	951	1	0	0	1	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0008	951	1	0	1	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0009	951	1	1	0	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	c0010	951	1	1	0	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R40_chr7_143217037_143228079	1/1	c0001	972	295	72	65	100	14	42	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	c0002	972	24	13	4	5	0	2	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	c0003	972	4	4	0	0	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	c0004	969	4	4	0	0	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	c0005	972	3	0	1	2	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	c0006	972	1	0	0	1	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	c0007	972	1	1	0	0	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R41_chr7_143472873_143483796	1/1	c0001	924	337	93	50	141	14	37	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	c0002	924	111	0	25	72	4	10	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	c0003	924	3	0	3	0	0	0	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	c0004	924	2	2	0	0	0	0	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	c0005	924	1	0	0	1	0	0	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	c0006	904	1	0	0	0	0	1	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	c0007	924	1	1	0	0	0	0	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R42_chr12_11180993_11191937	0/0	c0001	945	249	19	41	148	10	31	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/1	c0002	945	92	26	13	40	2	10	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	c0003	945	82	48	20	5	4	5	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	c0004	945	2	0	0	2	0	0	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	c0005	945	1	1	0	0	0	0	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	c0006	945	1	0	0	1	0	0	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R43_chr12_11086287_11097313	0/0	c0001	930	149	7	14	110	6	12	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	c0002	930	46	26	9	5	4	2	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	c0003	930	2	0	0	0	0	2	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	c0004	930	1	0	1	0	0	0	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	c0005	930	1	0	0	1	0	0	copy fasta	TAS2R43	chr12	11086287	11097313