JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS2R43_chr12_11086287_11097313	0/0	c0006	930	1	1	0	0	0	0	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R46_chr12_11056365_11067294	0/0	c0001	930	179	42	33	79	9	16	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/1	c0002	930	65	19	14	26	2	3	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0003	930	32	12	16	0	1	3	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0004	930	5	0	0	5	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0005	929	4	1	1	2	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0006	930	2	0	0	2	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0007	930	2	2	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0008	930	1	0	0	0	0	1	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0009	930	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0010	930	1	0	0	0	0	1	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0011	930	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0012	930	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	c0013	930	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R4_chr7_141771674_141786691	0/0	c0001	900	203	15	40	125	8	15	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	1/1	c0002	900	164	54	27	54	8	19	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0003	900	27	4	0	15	0	8	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0004	900	14	2	3	9	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0005	900	12	0	0	12	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0006	900	11	11	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0007	900	7	6	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0008	900	5	0	2	3	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0009	900	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0010	900	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	c0011	900	1	0	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R50_chr12_10980913_10991912	0/0	c0001	900	182	10	22	119	6	25	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/1	c0002	900	133	55	25	44	2	6	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0003	900	37	13	16	0	2	6	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0004	900	26	9	10	0	4	3	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0005	900	9	0	0	9	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0006	900	2	2	0	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0007	900	2	0	0	2	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0008	900	1	1	0	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0009	900	1	0	1	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0010	900	1	1	0	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	c0011	900	1	1	0	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R5_chr7_141785217_141796367	0/0	c0001	900	216	16	40	137	8	15	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	1/1	c0002	900	188	56	31	61	10	28	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0003	900	6	5	1	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0004	900	6	6	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0005	900	1	0	0	0	0	1	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0006	900	1	1	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0007	900	1	0	0	1	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0008	900	1	1	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0009	900	1	1	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	c0010	900	1	0	0	1	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R60_chr7_143438453_143449409	0/1	c0001	957	339	38	65	185	10	40	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	1/0	c0002	957	77	54	7	4	4	7	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	c0003	954	21	1	2	16	2	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	c0004	957	5	5	0	0	0	0	copy fasta	TAS2R60	chr7	143438453	143449409