JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAS2R60_chr7_143438453_143449409	0/0	c0005	954	3	0	1	0	2	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	c0006	957	2	0	0	2	0	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	c0007	957	1	0	0	0	0	1	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	c0008	954	1	0	0	1	0	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	c0009	957	1	0	1	0	0	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R7_chr12_10796532_10807627	0/1	c0001	957	334	84	65	135	13	36	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0002	957	44	0	6	26	3	9	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0003	957	12	0	1	11	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0004	957	5	1	4	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0005	957	2	0	2	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0006	957	2	2	0	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0007	957	2	0	0	2	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0008	957	1	0	0	1	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0009	957	1	0	1	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0010	957	1	0	1	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0011	957	1	1	0	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0012	957	1	0	0	0	0	1	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	c0013	957	1	0	0	1	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R8_chr12_10801051_10812286	0/0	c0001	930	198	18	33	106	12	29	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/1	c0002	930	144	28	32	63	3	17	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0003	930	45	35	8	0	0	2	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0004	930	12	0	1	11	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0005	930	3	0	3	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0006	930	3	3	0	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0007	930	1	1	0	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0008	930	1	0	1	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0009	930	1	1	0	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	c0010	930	1	0	0	0	1	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R9_chr12_10804094_10815168	0/0	c0001	939	200	20	36	101	14	29	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/1	c0002	939	181	56	37	66	4	17	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	c0003	939	12	0	1	11	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	c0004	939	5	3	0	0	0	2	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	c0005	939	4	4	0	0	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	c0006	939	3	0	0	3	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	c0007	939	1	1	0	0	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	c0008	939	1	0	0	1	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TASL_chrX_30553809_30582766	0/1	c0001	906	286	70	45	125	12	33	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	1/0	c0002	906	21	5	8	6	1	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	c0003	906	8	0	0	8	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	c0004	906	1	0	0	1	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	c0005	906	1	1	0	0	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	c0006	906	1	0	0	0	0	1	copy fasta	TASL	chrX	30553809	30582766
TASOR2_chr10_5679838_5768740	0/1	c0001	7293	101	18	24	39	7	12	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0002	7284	83	10	2	64	1	6	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0003	7293	47	5	3	31	2	6	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0004	7293	29	1	11	13	1	3	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0005	7293	17	0	4	13	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0006	7293	12	1	7	4	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0007	7284	9	7	0	0	1	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0008	7284	8	8	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740