JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TASOR2_chr10_5679838_5768740	0/0	c0009	7293	8	0	0	8	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0010	7293	8	2	3	0	1	2	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0011	7293	4	4	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0012	7293	4	4	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0013	7293	4	1	1	0	0	2	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0014	7293	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0015	7284	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	1/0	c0016	7293	3	2	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0017	7293	3	0	0	3	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0018	7293	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0019	7293	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0020	7284	2	2	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0021	7284	2	0	0	0	0	2	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0022	7293	2	1	0	0	1	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0023	7284	2	1	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0024	7293	2	0	0	2	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0025	7293	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0026	7293	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0027	7284	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0028	7293	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0029	7293	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0030	7284	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0031	7293	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0032	7284	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0033	7284	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0034	7284	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0035	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0036	7293	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0037	7293	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0038	7293	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0039	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0040	7293	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0041	7284	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0042	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0043	7293	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0044	7293	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0045	7293	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0046	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0047	7284	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0048	7284	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0049	7293	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0050	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0051	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	c0052	7293	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR_chr3_56615132_56688265	0/1	c0001	5013	95	23	13	44	4	10	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0002	5013	88	9	9	53	0	17	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	1/0	c0003	5013	57	6	15	20	7	8	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0004	5013	32	13	2	16	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0005	5013	27	23	4	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0006	5013	26	0	2	23	0	1	copy fasta	TASOR	chr3	56615132	56688265