JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BACH1_chr21_29293922_29351148	0/0	c0008	2211	1	0	0	0	0	1	copy fasta	BACH1	chr21	29293922	29351148
BACH2_chr6_89921528_90301843	1/1	c0001	2526	86	25	26	18	2	13	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0002	2526	32	14	4	7	0	7	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0003	2526	26	10	4	8	1	3	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0004	2526	18	10	5	1	0	2	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0005	2526	17	0	6	11	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0006	2526	4	4	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0007	2526	3	3	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0008	2526	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0009	2526	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0010	2526	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0011	2526	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0012	2526	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0013	2526	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0014	2526	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	c0015	2526	1	0	0	0	1	0	copy fasta	BACH2	chr6	89921528	90301843
BAD_chr11_64264830_64289665	1/1	c0001	507	352	90	68	141	14	37	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	c0002	507	32	3	6	18	2	3	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	c0003	507	3	0	0	1	0	2	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	c0004	507	1	1	0	0	0	0	copy fasta	BAD	chr11	64264830	64289665
BAG1_chr9_33247471_33269708	0/1	c0001	1038	318	70	57	156	5	29	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	1/0	c0002	1038	12	11	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0003	1035	6	5	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0004	1038	4	3	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0005	1020	2	0	0	2	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0006	1038	1	0	0	0	0	1	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0007	1038	1	0	0	0	0	1	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0008	1038	1	0	0	0	0	1	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0009	1038	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0010	1038	1	0	0	0	1	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	c0011	1038	1	0	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG2_chr6_57167326_57194833	1/1	c0001	636	244	80	54	74	10	24	copy fasta	BAG2	chr6	57167326	57194833
BAG3_chr10_119646380_119682819	0/1	c0001	1728	155	50	30	48	7	19	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	1/0	c0002	1728	136	29	14	75	3	14	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0003	1728	75	9	13	48	0	5	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0004	1728	30	1	15	0	2	12	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0005	1728	3	0	1	0	2	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0006	1728	3	0	0	3	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0007	1728	2	2	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0008	1728	2	2	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0009	1728	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0010	1728	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0011	1728	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0012	1728	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0013	1728	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0014	1728	1	0	1	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0015	1728	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0016	1728	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0017	1728	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	c0018	1728	1	0	1	0	0	0	copy fasta	BAG3	chr10	119646380	119682819