JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TASOR_chr3_56615132_56688265	0/0	c0007	5013	13	1	0	7	0	5	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0008	5013	5	5	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0009	5013	4	0	4	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0010	5013	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0011	5013	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0012	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0013	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0014	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0015	5013	1	0	0	0	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0016	5013	1	0	0	0	1	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0017	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0018	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0019	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0020	5013	1	0	0	0	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0021	5013	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0022	5013	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0023	5013	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	c0024	5013	1	0	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASP1_chr20_13384394_13643932	1/1	c0001	1263	284	78	37	125	16	26	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	c0002	1263	3	0	0	3	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	c0003	1263	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	c0004	1263	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	c0005	1263	1	0	1	0	0	0	copy fasta	TASP1	chr20	13384394	13643932
TATDN1_chr8_124483498_124544085	1/1	c0001	894	270	74	50	107	11	26	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	c0002	894	65	13	2	35	1	14	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	c0003	894	1	0	0	1	0	0	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	c0004	894	1	1	0	0	0	0	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	c0005	894	1	0	0	1	0	0	copy fasta	TATDN1	chr8	124483498	124544085
TATDN2_chr3_10243459_10286218	0/0	c0001	2286	123	22	15	66	0	20	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	1/0	c0002	2286	75	18	34	7	8	7	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0003	2286	50	10	14	12	1	13	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0004	2286	45	0	2	37	2	4	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0005	2286	29	29	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0006	2286	10	7	3	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0007	2286	8	0	0	8	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0008	2286	5	0	0	4	0	1	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/1	c0009	2286	3	0	2	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0010	2286	3	0	1	2	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0011	2286	3	2	1	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0012	2286	2	2	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0013	2286	2	0	0	2	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0014	2286	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0015	2286	1	0	0	0	0	1	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0016	2286	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0017	2286	1	0	0	0	1	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0018	2286	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0019	2286	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0020	2286	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	c0021	2286	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN3_chr1_212786894_212821830	1/1	c0001	825	300	56	50	151	14	27	copy fasta	TATDN3	chr1	212786894	212821830