JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TATDN3_chr1_212786894_212821830	0/0	c0002	825	74	33	10	23	0	8	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	c0003	825	12	1	2	5	0	4	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	c0004	825	1	0	0	0	0	1	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	c0005	825	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	c0006	825	1	0	0	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	c0007	825	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TAT_chr16_71560660_71582092	1/1	c0001	1365	300	68	52	132	13	33	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0002	1365	27	4	8	6	3	6	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0003	1365	25	7	13	2	0	3	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0004	1365	16	15	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0005	1365	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0006	1365	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0007	1365	1	0	0	0	0	1	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	c0008	1365	1	0	0	0	0	1	copy fasta	TAT	chr16	71560660	71582092
TAX1BP1_chr7_27735162_27834767	1/1	c0001	2370	337	73	60	157	12	33	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0002	2370	6	2	2	0	2	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0003	2370	5	5	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0004	2370	4	4	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0005	2370	3	3	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0006	2370	2	2	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0007	2370	2	0	2	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0008	2370	1	1	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0009	2370	1	0	0	0	0	1	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	c0010	2370	1	0	0	1	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP3_chr17_3657895_3673578	0/1	c0001	375	306	63	67	125	11	39	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	1/0	c0002	375	98	19	9	58	2	9	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	c0003	375	3	0	0	0	1	2	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	c0004	375	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TBATA_chr10_70766238_70790377	0/0	c0001	1059	189	36	36	81	6	30	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/1	c0002	1059	80	30	9	26	4	10	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	1/0	c0003	1059	60	13	11	29	1	5	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0004	1059	53	4	13	33	1	2	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0005	1059	5	0	5	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0006	1059	4	0	0	4	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0007	1059	4	3	1	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0008	1059	3	3	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0009	1059	2	0	0	2	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0010	1059	2	2	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0011	1059	1	1	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0012	1059	1	0	1	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0013	1059	1	1	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0014	1059	1	0	0	0	0	1	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0015	1059	1	1	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0016	1059	1	0	0	1	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0017	1059	1	0	0	1	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	c0018	1059	1	0	0	1	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBC1D10A_chr22_30286990_30331941	1/0	c0001	1527	238	74	49	80	12	22	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/1	c0002	1527	82	1	17	48	3	12	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0003	1527	42	10	6	20	1	5	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0004	1527	8	0	4	0	2	2	copy fasta	TBC1D10A	chr22	30286990	30331941