JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D10A_chr22_30286990_30331941	0/0	c0005	1527	6	0	0	6	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0006	1527	2	0	0	2	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0007	1527	2	0	0	2	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0008	1527	1	0	0	0	0	1	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0009	1527	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0010	1527	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0011	1527	1	0	0	1	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0012	1527	1	0	0	1	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0013	1527	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0014	1527	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	c0015	1527	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10B_chr16_30352102_30375494	1/0	c0001	2427	165	32	50	62	10	10	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/1	c0002	2427	63	14	17	20	2	9	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0003	2427	39	33	3	0	0	3	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0004	2427	34	1	3	11	2	17	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0005	2427	3	0	0	3	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0006	2427	1	0	0	1	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0007	2427	1	0	0	0	0	1	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0008	2427	1	0	0	1	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0009	2415	1	0	1	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0010	2427	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0011	2427	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0012	2385	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	c0013	2415	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10C_chr11_67399083_67415089	1/1	c0001	1341	201	14	46	96	13	30	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0002	1341	119	63	22	32	1	1	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0003	1341	36	8	4	24	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0004	1341	10	10	0	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0005	1341	1	0	1	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0006	1341	1	0	0	1	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0007	1341	1	0	0	1	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0008	1341	1	0	0	0	0	1	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0009	1341	1	0	1	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	c0010	1341	1	1	0	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D12_chr10_94397541_94541332	0/1	c0001	2328	234	48	37	106	13	29	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	1/0	c0002	2328	100	29	21	30	5	14	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0003	2328	3	3	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0004	2328	2	2	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0005	2328	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0006	2328	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0007	2328	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0008	2328	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0009	2328	1	0	0	0	0	1	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0010	2328	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	c0011	2328	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D13_chr9_128782253_128815430	0/0	c0001	1203	191	74	22	69	2	24	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	1/1	c0002	1203	190	8	50	101	9	20	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	c0003	1203	14	14	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	c0004	1203	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	c0005	1203	1	0	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430