JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D13_chr9_128782253_128815430	0/0	c0006	1203	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D14_chr4_6904826_7038114	1/1	c0001	2082	271	83	54	98	9	25	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0002	2082	16	2	5	1	1	7	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0003	2082	6	6	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0004	2082	2	0	0	2	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0005	2082	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0006	2082	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0007	2082	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0008	2082	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0009	2082	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0010	2082	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0011	2082	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0012	2082	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	c0013	2082	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D15_chr12_71834759_71929313	0/0	c0001	2025	213	44	30	130	4	5	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	1/1	c0002	2025	57	5	19	14	5	12	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0003	2025	55	35	6	3	2	9	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0004	2025	19	0	2	13	1	3	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0005	2025	5	1	0	4	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0006	2025	3	0	0	3	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0007	2025	2	1	1	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0008	2025	2	0	0	2	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0009	2025	2	0	0	0	0	2	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0010	2025	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0011	2025	1	0	0	0	0	1	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0012	2025	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0013	2025	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0014	2025	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	c0015	2025	1	0	0	1	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D16_chr17_79927343_80040872	1/1	c0001	2304	161	43	21	77	4	14	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0002	2304	60	20	7	22	2	9	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0003	2304	36	4	14	5	6	7	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0004	2304	27	2	7	12	1	5	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0005	2304	9	7	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0006	2304	8	1	0	3	3	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0007	2304	3	3	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0008	2304	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0009	2304	2	0	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0010	2304	2	0	1	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0011	2304	2	1	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0012	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0013	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0014	2304	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0015	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0016	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0017	2304	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0018	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0019	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0020	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0021	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872