JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D16_chr17_79927343_80040872	0/0	c0022	2304	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0023	2304	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0024	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0025	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0026	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0027	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0028	2304	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0029	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0030	2304	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0031	2304	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0032	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	c0033	2304	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D17_chr19_49872702_49893750	1/1	c0001	1947	178	29	31	97	5	14	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0002	1947	159	38	23	72	4	22	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0003	1947	31	6	9	15	0	1	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0004	1947	27	15	6	0	1	5	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0005	1947	4	3	1	0	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0006	1947	4	0	0	4	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0007	1947	3	0	0	3	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0008	1947	2	2	0	0	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0009	1947	2	0	1	0	1	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0010	1947	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0011	1947	1	1	0	0	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0012	1947	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0013	1947	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0014	1947	1	0	1	0	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0015	1947	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0016	1947	1	0	0	0	1	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0017	1947	1	0	0	0	0	1	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0018	1947	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	c0019	1947	1	0	0	0	0	1	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D19_chr4_26579084_26761223	0/1	c0001	1581	172	55	25	74	5	12	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0002	1581	104	19	16	51	6	12	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0003	1581	8	1	0	5	0	2	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	1/0	c0004	1581	7	6	0	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0005	1581	7	1	2	1	1	2	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0006	1581	4	4	0	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0007	1581	4	3	1	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0008	1581	2	0	0	0	0	2	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0009	1581	1	0	0	1	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	c0010	1581	1	1	0	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D1_chr4_37886084_38144173	0/0	c0001	3789	40	26	4	5	0	5	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0002	3789	26	13	3	10	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	1/1	c0003	3789	26	3	6	8	2	5	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0004	3789	23	5	2	13	0	3	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0005	3789	18	7	3	7	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0006	3789	18	0	0	15	1	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0007	3789	15	0	4	8	1	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0008	3789	15	0	3	10	1	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0009	3789	11	3	2	3	0	3	copy fasta	TBC1D1	chr4	37886084	38144173