JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D1_chr4_37886084_38144173	0/0	c0010	3789	9	0	2	4	0	3	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0011	3789	8	0	1	3	0	4	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0012	3789	8	0	8	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0013	3789	6	0	0	6	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0014	3789	6	2	3	0	1	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0015	3789	5	1	0	4	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0016	3789	4	0	1	2	1	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0017	3789	4	0	2	1	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0018	3789	4	0	3	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0019	3789	4	0	0	1	0	3	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0020	3789	4	0	3	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0021	3789	3	3	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0022	3789	3	0	0	1	0	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0023	3789	3	0	0	2	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0024	3789	2	2	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0025	3789	2	2	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0026	3789	2	2	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0027	3789	2	0	0	1	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0028	3789	2	0	2	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0029	3789	2	0	1	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0030	3789	2	1	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0031	3789	2	1	0	0	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0032	3789	2	0	0	2	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0033	3789	2	1	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0034	3789	2	0	0	1	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0035	3789	2	0	0	2	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0036	3789	2	1	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0037	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0038	3789	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0039	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0040	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0041	3789	1	0	0	0	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0042	3789	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0043	3789	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0044	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0045	3759	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0046	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0047	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0048	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0049	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0050	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0051	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0052	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0053	3789	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0054	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0055	3789	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0056	3789	1	0	0	0	1	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	c0057	3789	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D20_chr20_430480_467533	1/1	c0001	1212	366	95	71	150	14	34	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	c0002	1212	31	3	5	16	0	7	copy fasta	TBC1D20	chr20	430480	467533