JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D20_chr20_430480_467533	0/0	c0003	1212	3	0	0	3	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	c0004	1212	1	0	0	0	0	1	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	c0005	1212	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D21_chr15_73868564_73894214	1/1	c0001	1011	311	89	73	101	10	36	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0002	1011	39	0	0	32	0	7	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0003	1011	23	0	0	23	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0004	1011	3	0	3	0	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0005	1011	2	0	0	2	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0007	1011	1	0	0	1	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0008	1011	1	1	0	0	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	c0009	1011	1	0	0	0	0	1	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D22A_chr22_46757650_47180693	0/0	c0001	1554	104	62	19	14	3	6	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	c0002	1554	2	1	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	c0003	1554	2	1	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	c0004	1554	1	0	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	c0005	1554	1	0	0	0	1	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	c0006	1554	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	c0007	1554	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22B_chr6_37252772_37337970	0/1	c0001	1518	113	42	25	26	5	14	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	c0002	1518	67	22	23	9	4	9	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	1/0	c0003	1518	22	1	6	11	1	2	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	c0004	1518	17	17	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	c0005	1518	2	0	2	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	c0006	1518	1	0	0	0	0	1	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D23_chr3_100255992_100330238	1/1	c0001	2100	338	65	70	155	16	30	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0002	2100	7	7	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0003	2100	6	0	0	6	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0004	2100	3	3	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0005	2100	1	1	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0006	2100	1	1	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0007	2100	1	0	0	1	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	c0008	2100	1	1	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D24_chr16_2470127_2510730	1/1	c0001	1680	215	54	45	65	12	37	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0002	1680	21	21	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0003	1680	4	0	0	4	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0004	1680	3	0	2	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0005	1680	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0006	1680	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0007	1680	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0008	1680	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0009	1680	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0010	1680	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0011	1680	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0012	1680	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0013	1680	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0014	1680	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	c0015	1680	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D25_chrX_48534714_48567609	0/0	c0001	2067	157	60	24	61	2	10	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	1/1	c0002	2067	128	19	26	57	5	19	copy fasta	TBC1D25	chrX	48534714	48567609