JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TBC1D25_chrX_48534714_48567609	0/0	c0003	2067	2	0	0	0	2	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0004	2066	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0005	2066	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0006	2067	1	0	0	0	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0007	2067	1	0	0	0	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0008	2067	1	0	0	0	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0009	2067	1	1	0	0	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	c0010	2061	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D26_chr17_15727283_15749782	1/0	c0001	1407	196	33	43	96	5	18	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/1	c0002	1407	133	15	24	75	4	14	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0003	1407	75	13	15	30	5	12	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0004	1407	18	0	0	17	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0005	1407	13	13	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0006	1407	8	7	0	1	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0007	1407	7	6	1	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0008	1407	3	1	0	1	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0009	1407	2	2	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0010	1407	1	0	1	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0011	1420	1	0	0	0	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0012	1407	1	0	0	0	1	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0013	1407	1	0	0	0	1	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0014	1407	1	0	0	0	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0015	1407	1	1	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0016	1407	1	0	0	1	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0017	1407	1	0	0	1	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	c0018	1407	1	1	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D28_chr17_18629247_18649391	0/1	c0001	633	350	59	46	211	8	25	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	1/0	c0002	633	96	32	28	10	6	19	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	c0003	633	19	5	8	0	0	6	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	c0004	633	1	0	0	1	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D2B_chr15_77989985_78082711	0/0	c0001	2892	83	5	12	52	4	10	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	1/0	c0002	2892	78	47	13	3	6	8	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/1	c0003	2892	78	14	18	28	6	11	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0004	2892	18	0	6	2	0	10	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0005	2892	10	10	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0006	2892	5	0	0	5	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0007	2892	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0008	2892	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0009	2892	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0010	2892	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0011	2892	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0012	2892	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0013	2892	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	c0014	2892	1	0	0	0	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2_chr9_98194011_98260649	0/1	c0001	2787	99	9	17	56	3	13	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	1/0	c0002	2787	82	2	19	44	6	10	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0003	2787	65	3	13	38	3	8	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0004	2787	42	29	7	3	2	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0005	2787	8	3	2	0	2	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	c0006	2787	7	1	4	2	0	0	copy fasta	TBC1D2	chr9	98194011	98260649